Sonoma Creek Enhancement Project

Reviving 400-acres of wetland habitat in San Pablo Bay.

Sonoma Creek Marsh Photo: Haymar Lim/Audubon CA

Audubon California, U.S. Fish and Wildlife Service, and Marin Sonoma Mosquito Control District are partnering to  enhance 400 acres of tidal marsh habitat on the San Pablo Bay National Wildlife Refuge along Sonoma Creek in northern San Francisco Bay. The project is part of Audubon’s Coastal Resilience work and this project in particular is the first of its kind to demonstrate how to ensure the marsh and its wildlife will be better adapted to withstand climate change in the future, particularly from sea level rise and storm surges. 

The project will benefit birds such as Ridgway’s Rails, Black Rails, migratory waterbirds, and a number of marsh songbirds, along with the endangered salt marsh harvest mouse and native plants. Fish, such as Coho salmon and steelhead, rely on healthy wetlands as habitat where juvenile fish can feed and grow.

Designated as an Important Bird area, San Pablo Bay and its surrounding wetlands provide critical habitat for the birds of the Pacific Flyway. Birders visiting the refuge can see Brown Pelicans, White-tailed Kites, Golden Eagles, Peregrine Falcons, Common Yellowthroats, and migratory shorebirds including Whimbrels and Willets.

Site History

The Sonoma Creek runs from Sonoma County into the San Pablo Bay on the northernmost end of the greater San Francisco Bay.  More than a hundred years of mining and agricultural operations have greatly limited the ecological function of these wetlands. Open water sediment from hydraulic mining during the Gold Rush caused a rapid buildup of mud flats which were subsequently turned into farmland, and maintained by levees.

In the last three decades, tidal action has reclaimed some of the area, creating stagnant wetlands that built up too fast to form natural channels. These stagnant pools form algal mats and harbor mosquitos. The remaining agricultural land has now become too salty for most agriculture, and some has been sold or abandoned.

Project Goals

The core of the project involves constructing a network of tidal channels within the marsh to drastically improve tidal exchange and nutrient cycling and provide habitat to a myriad of marsh-dependent wildlife species. The channels will also provide spawning and feeding grounds for endangered and commercial fishes.

Improving hydrology will improve water quality by increasing circulation and drastically reducing the amount of pesticides applied to areas  of ponded water that currently facilitate heavy mosquito production.

The project also has a vital climate change adaptation component. Using soil excavated from digging the channels, we created a gently-graded high marsh transition zone along the edge of the marsh and habitat “marsh mounds” within the marsh.  These features will reduce storm surge flooding of adjacent private lands and provide crucial high tide refuges for rails, shorebirds, and small mammals.

This project also helped change Bay Conservation and Development Commission’s (BCDC) restoration policy and permitting process to make it easier for restoration projects to use dredge spoil for beneficial uses in the future. 

Implementation of the project has also provide hands-on educational opportunities for students who would not otherwise experience natural history in the field setting.

Progress Updates

Phase 1 of the Project was constructed in 2015 and involved excavating a large, 4,550-ft long tidal channel through the center of the marsh and using the extracted soils to construct marsh mounds along the channel alignment, as well as a wetland-upland habitat transition “ramp” (or horizontal levee) along the existing perimeter levee. 

Phase 2 of the project was completed October 2020, and added the following enhancement elements:

1. Constructing an additional 1,150 linear ft of the central tidal channel and utilizing the extracted soils to construct a series of marsh mounds along the channel length.

2. Removing a series of rock sills within the central channel, burying the material within pits excavated on the adjacent marsh plain, and using the void spoils to build additional marsh mounds.

3. Enlarging/extending existing tidal marsh channels into persistent open water impoundments on the east side of the central tidal channel to improve tidal exchange and drainage within these areas.

For a more visual overview of this groundbreaking project’s history and progression, please visit our blog post- “Restoring Sonoma Creek for Climate Resilience.”

Consultants for this project are Wetlands and Water Resources, Inc. Gillenwater Consulting, LLC, and ESA Associates.  Construction is being carried out by Hanford ARC.

Sonoma Creek Project Biological Monitors

Funding and other support for this project has been provided by:

  • U.S. Fish and Wildlife Service - National Coastal Wetlands Conservation Grant
  • California Wildlife Conservation Board
  • National Fish and Wildlife Foundation
  • California State Coastal Conservancy
  • Environmental Protection Agency (EPA)
  • Marin-Sonoma Mosquito and Vector Control District
  • San Pablo Bay National Wildlife Refuge
  • Point Blue Conservation Science - STRAW program (Students and Teachers Restoring a Watershed)
  • Individual donors and volunteers

Here's the latest on the project

UN Environmental Program Recognizes Audubon Sonoma Creek Enhancement as Climate Change Adaptation Model
Sonoma Creek Restoration

UN Environmental Program Recognizes Audubon Sonoma Creek Enhancement as Climate Change Adaptation Model

— Innovative restoration project protects against sea-level rise, controls mosquitos
The Rails are Rebounding at Sonoma Creek
Sonoma Creek Restoration

The Rails are Rebounding at Sonoma Creek

A marsh springs back (with a little help) in the North Bay

Restoring Sonoma Creek for Climate Resilience
Coastal Resiliency

Restoring Sonoma Creek for Climate Resilience

First-of-its-kind project restores 400 acres of tidal marsh habitat along Sonoma Creek in northern San Francisco Bay, helping withstand sea level rise and storm surges from climate change.

Preparing for the next phase of restoration in Sonoma Creek marsh
Sonoma Creek Restoration

Preparing for the next phase of restoration in Sonoma Creek marsh

Our 2015 project is already providing important habitat for sensitive bird species.

Study shows that sea level rise threatens West Coast marshes

A new study shows that sea-level rise driven by climate change could swallow up many of the Pacific Coast's most important marshes in the next hundred years. But researchers say there's still time to do something about it. Audubon California is working hard to protect many of these areas, supporting Measure AA in the San Francisco Bay and restoring vital marshes in Sonoma Creek.

The hidden beauty of marshland

Before the enhancement (left), Sonoma Creek had "dead zones," where vegetation could no longer grow. Now (right), water is channelled and greenery is returning to the areas. Photo: Google Earth (left), Courtney Gutman (right)

Courtney Gutman got an aerial view of the progress made at our Sonoma Creek enhancement project which we completed in November. Gutman is our restoration project manager from the Richardson Bay Center & Sanctuary and oversaw construction on the 400-acre tidal marsh in the greater San Francisco Bay.

Within weeks of finishing the construction, the team could already see a myriad of vegetation and wildlife coming back to the area, including a variety of small shorebirds and pickleweed, a native succulent that absorbs saltwater. 

The Sonoma Creek enhancement is the first project of its kind on a pre-existing marsh. Before the project, sea water was able to wash in during high tide, but with no way for it to drain, stagnant pools became perfect breeding ground for mosquitoes and an imperfect breeding ground for plant life and other animals. To solve this problem, we dug canals to help with drainage of the area. Natural channels can now form in areas that were once stagnant, contributing to a healthier marshland. We also moved about 30,000 cubic yards of soil to create a transition ramp that slows storm surges and gives animals somewhere to go when the tide gets too high. 

Gutman says people are starting to see estuaries beyond their importance for wildlife, plants, and biodiversity.

“Now on top of that we’re seeing how important they are for combatting climate change. They’re truly our natural barriers for rising sea levels,” she says. 

For more information about the project, visit our Sonoma Creek page

Taking a tour through the new channels in Sonoma Creek Enhancement site

I took a tour of our Sonoma Creek Enhancement Project with Meg Marriott, Refuge Biologist at San Pablo Bay National Wildlife Refuge. It's hard to tell in the video but we saw Marbled Godwits, Willets, and Long-billed Curlews.

New bird species seen at Sonoma Creek Marsh

Wilson's Snipe Photo: shell game/Flickr creative commons

Yesterday was the first survey the Audubon team was able to do since construction ended at the Sonoma Creek Enhancement Project. In the marsh and along the newly formed channel during a high tide (>5’), the group counted:

  • 600 small shorebirds (Western/Least Sandpipers/Dunlin);
  • 117 Greater Yellowlegs;
  • 69 Willet;
  • 2 Long-billed Curlew;
  • 5 Black-bellied Plovers;
  • 1 Wilson’s Snipe. The Snipe was never seen in the marsh during surveys prior to construction.

Later during a ‘low’ tide, the group encountered smaller numbers of birds but spotted a rare Lesser Yellowlegs among a group of Greater Yellowlegs.

The group counted a couple of Northern Harriers scouting the area for meals, as well as a White-tailed Kite.

Birds flocking to completed tidal marsh enhancement

Construction wrapped up in November on our 400-acre tidal marsh enhancement project at Sonoma Creek in the San Pablo Bay National Wildlife Refuge, located in the northern part of San Francisco Bay. The new habitat is already attracting a lot of birds.

400-acres of important bird habitat restored in San Pablo Bay
Sonoma Creek Restoration

400-acres of important bird habitat restored in San Pablo Bay

— $3 million project will provide home for endangered species like the Ridgway’s Rail
San Francisco Bay
San Francisco Bay

San Francisco Bay

Audubon California is committed to protecting the birds and habitat of the San Francisco Bay.

Read more

Lower Tubbs Island restoration
Seas & Shores

Lower Tubbs Island restoration

Audubon California partnered with the San Pablo Bay National Wildlife Refuge in 2010 to restore vital bird habitat in San Pablo Bay.

Read more

Seas & Shores


Seabirds and shorebirds need our help.

Read more

Ridgway's Rail

Latin:  Rallus obsoletus

Illustration for Ridgway's Rail

White-tailed Kite

Latin:  Elanus leucurus

Illustration for White-tailed Kite

Brown Pelican

Latin:  Pelecanus occidentalis

Illustration for Brown Pelican


Latin:  Tringa semipalmata

Illustration for Willet

How you can help, right now